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Why is the liver so weirdly regenerative?

307 pointsby 11h agodynomight.substack.com
167 comments
10h agoHN ↗

I agree. Very shallow "sources" and no qualifications to be speaking on a medical topic. There is a role for pop science to disseminate knowledge but this is pure speculation.

9h agoHN ↗

There's nothing wrong with speculation on HN. Speculation is intimate with curiosity, and curiosity, not correctness, is the guiding value of this site.

It may seem odd to demote correctness in that way, but it doesn't mean we value incorrectness. Correctness is good, just not at the top of the hierarchy. Curiosity (specifically, intellectual curiosity) is what we're optimizing for: https://hn.algolia.com/?dateRange=all&page=0&prefix=true&sor....

We value the freedom to meander curiously. Some paths turn out to be wrong [1], but that is how new things are learned, and it's a good way to spend time. People are allowed to be wrong on HN as part of figuring out what's true [2]. Truth is crucial, but one ought not to squeeze the throat of speculation so tightly that wrong things aren't allowed to be spoken, or fun to be had.

[1] not saying the OP is right or wrong - I have no idea - but the article looks like the fun kind of meandering that has a place here.

Edit: https://www.etymonline.com/search?q=meander - "from Greek Maiandros, name of a river in Caria noted for its winding course". Is there a better website than etymonline?

[2] https://hn.algolia.com/?dateRange=all&page=0&prefix=false&qu...

https://news.ycombinator.com/item?id=11655206

8h agoHN ↗

What is a new hypothesis other than a conspiracy of circumstances making better sense..

10h agoHN ↗

I can't judge if you are correct or not. It would be more convincing if you could name some of the problems. Since the article is "garbage", there should be lots of things wrong to choose from.

2h agoHN ↗

He's right, it's garbage and we should know enough (it's high-school level education) to reject it without an explanation. The fact that we don't is actually scary.

Evolution does not care about creating perfect bodies, that's not how it works. Aging and death are superpowers of an unique arrangement of matter, not bugs.

We know diabetes and other issues come from changes humans introduced in our diets, not faults in the evolutionary process.

The text draws from a weird mixture of religious influence (it's not explicit) that lowkey estabilished things should be perfectly designed (in science, mentioning "design" is an issue; fine but aged badly in science communication). It's just not the correct framing to be educational about how our bodies work, and sets up wrong expectations about what we know of nature.

10h agoHN ↗

I am in awe about how wonderfully engineered by evolution the body is. E.g., what we are able to do with it and how it heals itself when we have an injury. Sure, many people would not live long without external intervention, but many others would. I still want to see the robot that can survive 80 active years without maintenance.

9h agoHN ↗

The human body can't survive 80 active years without maintainance. They take drugs, they see the doctor, etc.

9h agoHN ↗

But those who did not, got quite old without ever seeing a doctor.

(If we are talking about hunter gatherers, not poor exploited peasants)

9h agoHN ↗

Gurven, Michael & Hillard Kaplan (2007). “Longevity Among Hunter-Gatherers: A Cross-Cultural Examination.” Population and Development Review, 33(2), 321–365

If you made it past age 5 as a hunter-gatherer you’d likely live to 50-60 years of age.

9h agoHN ↗

Humans have assisted each other medically, supported injured and disabled tribe members, and sought out medicinal herbs since long before history was written. I'm not sure how you'd delineate between modern health care and when humans never had some notion of health care and/or support when bodies enter failure modes. We don't survive well without a lot of assistance and care, and living long lives required plenty of bodily maintenance regardless of how fortunate and healthy we were.

7h agoHN ↗

I think, if you add clarity, such as how aspirin alone is a wonder, how iodine to clean wounds is a life saver, how soap is a miracle, and all the parasites we don't have, yet all this we take for granted.

We are certainly much healthier, with the little trinkets we keep in our houses.

7h agoHN ↗

quite old as in 50 because the avg lifespan back then is certainly lower than it is now.

5h agoHN ↗

There was no "average" lifespan back then. It is a bimodal curve, one peak young, one peak old. "Life expectancy" is far more about the size of the two peaks than an average. In modern society the old peak very much dominates, but even then "life expectancy at birth" is still substantially influenced by the size of the two peaks. Much of the difference across the developed world actually comes down to what doctors classify as a live birth. (Big negative correlation between infant mortality and stillbirth.)

9h agoHN ↗

Well, so much for that discussion.

9h agoHN ↗

Well, we do at least have to eat enough food and sleep ~1/3rd of our lives. That's kinda maintenance

9h agoHN ↗

that's absolutely maintenance, without it you have a total system failure in a week

8h agoHN ↗

Compared to most animals that spend their entire day foraging for food, it's not too bad. Adapting to eating dense and very nutritious animal flesh is a great time-saver, and as we didn't evolve long fangs, we had to learn to use tools instead, and the rest is history. (mixing cause and effect here for dramatic purposes)

8h agoHN ↗

I think learning to cook food was likely a greater benefit. It's like we externally expanded our means of digestion.

I watched a Ted talk where the speaker suggested our large brains with their high energy consumption would not have been possible were it not for cooking.

6h agoHN ↗

Which came first, steak or intelligence?

3h agoHN ↗

Bone marrow came first. We were scavengers for the longest time. We invented tools to break the bones hyenas would leave. Skulking little scavengers.. until spears were invented then hoo boy - shit went exponential.

9h agoHN ↗

Humans don't last long without topping up their fluids and consumables.

9h agoHN ↗

When you watch those sci-fi shows and folks have nanobots implanted in them that heal wounds really fast or do other cool things I can't help but think in many ways we already have that technology we just need it to do more, faster as our brains and ability to create things have outpaced the rate of evolutionary change.

7h agoHN ↗

The human machine doesn't just survive without external intervention, it actually gets better at being a machine. Speed, endurance, power, coordination... all improve with usage.

7h agoHN ↗

until you get old and goes the opposite direction

9h agoHN ↗

Other animals do get heart cancer, which is fascinating. It's still very uncommon compared to other cancers, but not virtually absent as it is in people.

10h agoHN ↗

   I greatly resent having to be a biological organism and subject to all the poor engineering and design decisions that entails.

The first word of that sentence implies its absurdity quite beautifully. She resents, therefor she is.

And then this:

  Brains. After you reach adulthood, neurons don’t divide. If some of your neurons die—which happens every day—then they’re gone. If you get a brain injury, the other neurons will try to “learn around” the injury, but the neurons themselves are never replaced.

We need more neuroscience in schools! This summary is technically correct ofc, but to imply that the brain is missing some obviously-better option is absurd. We're meat that thinks, y'all; it's far from crap.

9h agoHN ↗

IIRC the slow loss of neurons is more than balanced by the additional fine-tuning - unless you get dementia, if course.

Loss of neurons isn't disastrous as long as it's not too many. Babies are born with several times more neurons than children have, and spend a few months letting all the useless ones die. Apparently it's better to start with a random tangle and prune it to shape (like cutting a box hedge) than to make a hedge grow in a box shape to begin with.

And IIRC brains can grow more neurons under some circumstances (certain drugs?) - they just normally don't.

6h agoHN ↗

I’m pretty sure that’s been debunked and they normally do.

9h agoHN ↗

Why is it absurd to say that the human brain could be better? That seems obviously true to me.

9h agoHN ↗

the claim isn't complete, either. Recent research has demonstrated adult neurogenesis (growth of new cells that originate from neural stem cells).

10h agoHN ↗

Evolution decided the good outweighed the bad, and I expect that evolution was right.

We can expect evolution to do the right thing for the genes. Not for us.

9h agoHN ↗

I get its just a framework to understand what is happening, but I always hate the phrasing of describing a 'decision' to a process like evolution. There are no decisions being made in the process, just a series of outcomes that lead in a direction

9h agoHN ↗

Indeed, I’ve heard so many people misunderstand it because of this type of wording. Like there is still some plan and series of steps we’re following - which really misses the whole point and why it’s worth knowing in the first place

9h agoHN ↗

Evolution is literally just the observation that there are lots of things that self-replicate.

That's it. That's the entire thing. Plus some nuance about things that self-replicate faster than other things...

It occurs at all levels. Amyloid protein in Alzheimer's patients is self-replicating. So are cells. So are individual parts of cells. Sometimes things replicate by being parts of a larger thing that replicates, sometimes they don't. It's all one big chaotic tangled mess with no particular purpose or design. Human cells evolve, so do humans, so do human societies. So do rocks.

9h agoHN ↗

Rocko can't have kids, because Rocko is just a stupid rock.

8h agoHN ↗

Possibly a reference to A.G. Cairns-Smith, who speculated about evolving clay crystals. (They can sit in a stream and accumulate minerals, and reproduce that way.)

5h agoHN ↗

Crystals catalyze their own expansion in a suitable solution.

8h agoHN ↗

No, evolution is not an observation that there are things that replicate. Darwin's view, which has survived mostly intact, is that there is replication with variation and that more fit individuals replicate at a higher rate ("survival of the fittest" isn't a correct description; plenty of less fit individuals do replicate, but they contribute very little to the population genetics in the long run)

And amyloid protein doesn't self-replicate. An instance of the misfolded form causes other folded proteins of the same type to transition to the misfolded form. It's a form of catalysis, not self-replication.

8h agoHN ↗

Seems like splitting a hair. In a world abundant with other amyloids, they'd self-replicate. Cells likewise need nutrients and a favorable environment.

8h agoHN ↗

In retrospect I conclude you're right (that it's splitting a hair). I went back and some literature does use the term self-replication although at least within my academic circles, we consider autocatalyzed template matching simpler than self-replication.

5h agoHN ↗

I mean, that might be the fundamental driver of evolution, but we have observed a lot of other emergent properties that happen because of that process, and those observations form our understanding of what those self-replicating things lead to.

4h agoHN ↗

Sure, those are the ingredients for evolution to occur. Replication and variation affecting selection.

But it's also pretty reductive to say it's the entire thing. You'd be hard pressed to describe the history of life on earth using only those three concepts. You could do it, but it would be a bit like describing the workings of a human cell exclusively using quantum field theory.

There are many emergent concepts, the understanding of which brings a lot more explanatory power. Things like selective pressure and evolvability. Our understanding of evolutionary biology and evolution in general indeed continues to evolve nearly 2 centuries after On the Origin of Species.

One of the most interesting things to me is that the process of evolution itself evolves. Variation, replication and selection evolve over time. Evolution seems to accelerate. Evolution can even create entirely new substrates for itself on top of the old ones. If you look at all the traits that distinguish humans from our closest relatives, the brain sizes, the slow maturation of offspring, our vocal chords, complex language, etc, there's a single thread running through all of it, namely an entirely new evolutionary substrate: culture. Once culture appeared, evolution accelerated massively. And cultural evolution itself seems to accelerate. It took several hundreds of thousands of years to get to the agricultural revolution, but then it only took several thousand years to reach the industrial revolution/enlightenment. From there it took centuries to invent the computer, about half a century for the internet and now society changes dramatically within a single decade, some might even argue a single year. In certain specific cases, we can even do evolution in the span of hours or minutes (seconds?) now, with genetic algorithms and the like.

And yes, biological evolution, cultural evolution and genetic algorithms all operate via variation, selection and replication, but it should be pretty clear by now how important all the little details and emergent phenomena are for understanding the differences between them.

8h agoHN ↗

Oh, fair point, I did the pathetic fallacy (too). Beneficial thing, then.

5h agoHN ↗

Selfish gene theory is discredited as reductionist and mostly wrong. You can't ignore the whole organism.

3h agoHN ↗

Says who? Please expand on this discrediting.

9h agoHN ↗

The punishment for Prometheus stealing fire from the Gods and gifting it to humanity, was to be chained to a rock and having an eagle feed on his liver which would regrow the next day.

9h agoHN ↗

For what it's worth, Prometheus was a Titan, and Titan was immortal, so his liver regrowing the next day wasn't really that special. If eagle fed on his heart, or lungs, they would've regrown too.

The Greeks chose liver because it symbolized the defiance Prometheus had against gods.

9h agoHN ↗

Humors perhaps. Not my area, so I do not recall the correspondence ...

9h agoHN ↗

It was the believed area of emotion, passion and 'soul'. I think western/modern religion has morphed from the liver to the heart essentially.

8h agoHN ↗

This is still the normal in the middle east (and likely elsewhere)! In Turkey you call somebody dear to you "my liver" as a pet name.

9h agoHN ↗

There are a bunch of Japanese words (including a several loanwords from Chinese) that use the liver / gallbladder metaphorically for courage. Both derive from associations between the humours and personality / behavior. I have no idea, however, why both Eastern and Western naive psychology associate gall with, well, gall.

8h agoHN ↗

In Italian, to have 'liver' (fegato) means to be courageous.

8h agoHN ↗

I have no idea, however, why both Eastern and Western naive psychology associate gall with, well, gall.

Possibly because it's filled with strong acid.

8h agoHN ↗

I phrased it awkwardly. Simply put, in Ancient Greece, liver was something like heart in modern society. It was the seat of human emotions.

So by destroying Prometheus' liver, Zeus attempted to destroy his human emotions, including his pride and defiance against gods.

8h agoHN ↗

I don’t think it was phrased awkwardly, I was just curious.

9h agoHN ↗

I'm thinking the Greeks chose liver because it is the first thing that many predators will eat from a kill - large, more nutrient-dense than almost any other tissue, and relatively quick to access.

8h agoHN ↗

There's really no knowing why the Greeks chose liver, or some specific Greek chose liver.

It could have been because the liver was regenerative and they were using the titan with the regenerating liver as another reference to humanity, or it could have been as someone pointed out because predators like to eat the liver first, or it could have been that you can take damage to the liver and live for hours afterwards in agony whereas the same amount of damage to the heart or lungs is apt to cause death to come much quicker.

Perhaps there are undiscovered variants out there were the eagle or a serpent or some other animal attacks his genitals, or his eyes.

But at any rate the Eagle ate his liver, it means nothing in particular, and at the same time it means every particular interpretation we can place on it.

8h agoHN ↗

Whatever the actual reason for choosing the liver was, we can be certain it wasn't its regenerative property, since such proprerty was unknown to the Greeks at the time.

8h agoHN ↗

Probably not, I don't think I ever read Galen mentioning it, but then again people would get injured in the liver and recuperate better than other injuries I suppose, which makes me think it is surprising if he didn't.

Just went and checked, evidently he never said anything about it.

old American translation of Galen and Hippocrates for anyone interested, as it can be difficult to find otherwise

https://oll.libertyfund.org/titles/coxe-the-writings-of-hipp...

8h agoHN ↗

I don't know about the Greeks but I know a lot of ancient cultures thought the liver was the most important organ (probably because it's full of blood).

For example in Persian poetry the word liver is found pretty much everywhere you would expect to see the word heart.

"You are my liver" is a nice/romantic thing to say to this day.

7h agoHN ↗

i mean it's called the liver not the dier

8h agoHN ↗

I thought they chose it because it tastes great with some fava beans and a nice Chianti.

6h agoHN ↗

But why were those accompaniments chosen for the liver? Because all three foods are high in tyramine, which is toxic if you're on an MAO Inhibitor. Why would Hannibal be on an MAOI? I have no idea, tbqh. They're for depression and Parkinson's, not antipsychotics.

9h agoHN ↗

Anybody on HN knows platforms to discuss this ?

9h agoHN ↗

This is a platform and we are discussing this, which means such a platform isn't enough for what you need. Not judging, actually I've felt a degradation in engagement quality as of late, maybe it's personal bias, but the discussions seem more shallow or aggressive.

In any case, what would you expect from such a platform? That would help with recomendations.

8h agoHN ↗

Hacker news is dedicated to 'tech' and I'm looking for advances in biology.

7h agoHN ↗

I was in the same place you are now but looking for places to discuss philosophy and looking at the state of mainstream sites like Reddit I decided the open web isn't a place for such discussions because of the sheer volume of noise.

I think the best place to discuss most things nowadays is the real world, but it takes time to build connections in the real world. HN is still a place of real productive discussions but not without a lot of moderation and even so it's still barely functional.

6h agoHN ↗

I kinda agree about reddit, either too much noise or gatekeeped (iirc some medical subreddits are mostly students or professionals only).

1h agoHN ↗

I’ve been waiting 10 years for articles like this on HN. I used to wonder why nobody here was discussing or building startups around health. Turns out they are, but those topics are discussed on specialized medical forums.

Apparently, physical health isn’t something you’re going to talk about with investors and users, even though it affects everyone. Before AI, this field was too specialized and there were very few founders willing to work in it.

9h agoHN ↗

I feel like this is obvious. Eventually dying of all the weird body failures doesn’t inhibit your ability to procreate, but if you cannot survive alcohol or other various poisons you’ll never make it to a fertile age.

9h agoHN ↗

Picking the wrong berry from a bush isn't so difficult. Ask me how I know. And, for my second encounter, don't think because you see an animal eating it, it's safe!

8h agoHN ↗

Did you know birds do not have receptors for capsaicin? They can eat any pepper and it doesn't affect them. So if you see a bird snacking on a pepper that's red or greenish-yellow, wrinkly, and has a pointy end, well ... watch out

7h agoHN ↗

And onions are mildly toxic to cats and dogs. There is a lot less shared responses as to what is toxic or edible across species.

Basically every flavor compound in an herb or spice we eat is a poison directed at insects, microbes, or other creatures. (much less every medicinal or psychoactive compound found in nature)

8h agoHN ↗

My guess is that this is half the story. It seems like there would be some advantage to some creatures of not aging, or having individuals who have significant longer life spans.

This is common in evolutionary algorithms anyway so it's notable we don't see it in nature, at least not in the form of extended lifespan perhaps measured by average lifetime heart beats. It's easy to imagine a world where nature might want to keep the alpha lion around longer than the others so it can have more offspring, for example.

7h agoHN ↗

It seems like there would be some advantage to some creatures of not aging, or having individuals who have significant longer life spans.

There is, if there were no advantage a whole lot more species would die immediately after reproduction like the octopus.

Many simpler organisms are vaguely immortal.

It's easy to imagine a world where nature might want to keep the alpha lion around longer than the others so it can have more offspring, for example.

The utility of genetic diversity puts a lot of pressure against this.

2h agoHN ↗

There is, if there were no advantage a whole lot more species would die immediately after reproduction like the octopus.

I didn't just meant extending lifespan, I meant extending the time an individual is fertile.

The utility of genetic diversity puts a lot of pressure against this.

High levels of elitist selection lowers diversity and can have a negative impact on a population's adaptive ability, but there is a sweet spot to diversity. Maximally diverse is just noise after all.

A small amount of elitism is generally what you would expect to be selected for, and we certainly see this other forms in most creatures, but never in the form of extended life span. That makes me suspect there's probably something fundamentally difficult about extending an organism's lifespan given our biological architecture and that's why evolution has favoured other forms of elitist selection.

7h agoHN ↗

It's more than possible to make it to adulthood without ingesting a drop of alcohol, even if you're talking about fermented fruit. It's easy, in fact.

9h agoHN ↗

Because alcoholism forces hunter gatherer cultures into settlements, which are the next stage of civilization and reward those doing that choice?

7h agoHN ↗

wouldn't it be our ancestors just liked booze too much and the liver said alright genes, hold my beer

6h agoHN ↗

But if you want to avoid withdrawls.. you better harvest and store that honey. And that wheat- all that beer, all that mead. Just to stop shivering.. the addiction of civilization.. and all you need is earthen kegs and a cellar.

6h agoHN ↗

Actually it may be the opposite. Alcohol is needed for people within settlements to bond.

8h agoHN ↗

Shouldn't the question be, "Why isn't everything else?"

8h agoHN ↗

"Some day, your immune system may decide to attack your pancreas."

Immune attack of the pancreas is usually a disease of youth. Type 2 diabetes which is overwhelmingly the diabetes associated with aging is not an autoimmune disease.

7h agoHN ↗

Adult onset Type 1 has become a lot more common in recent decades. Ask me how I know.

7h agoHN ↗

Just like a ton of other autoimmune diseases.

6h agoHN ↗

Psoriasis sufferer checking in. Brutal.

6h agoHN ↗

I don’t know how adult 22 is considered but yeah. A younger sibling got it when they were ~13.

When we noticed the signs and went into the ER a few of the (younger) doctors thought it was Type 2, while the attending knew it was just late onset Type 1.

4h agoHN ↗

Know someone who developed type 1 diabetes in his 30s.

3h agoHN ↗

Same. At first he was happy as he lost a load of weight, then it kept happening and he nearly died in the office. Just collapsed one day. Insulin is an amazing invention. My dog, a little pug, gets porcine insulin after prednisone saved her life but gave her type 1.

2h agoHN ↗

It's so rare in adults it's got the cute name maturity onset diabetes of the young (MODY).

2h agoHN ↗

MODY is something else entirely (a genetic mutation driven disease with distinct pathophysiology from Type 1). What’s being discussed here is LADA (late autoimmune diabetes in adults). LADA itself isn’t that rare but it is a small minority of all cases of diabetes in older adults.

8h agoHN ↗

And even after taking [immunosuppressants], there’s a 30% chance the kidney will be rejected within 10 years. This is not helpful.

To the author: thank you, you made my day. It had been a very, very long time since I last read an article on the Internet that felt written by a human being - with humor, some poetry, and science.

7h agoHN ↗

Immunosuppressants like tacrolimus given at too high of a level for many years can wear down your kidneys faster requiring a transplant potentially after ten years.

6h agoHN ↗

I asked ChatGPT if it is OK to an explain a joke without being asked to do so, and She said no.

6h agoHN ↗

Why nature did this? So that 3rd parties don't engage in organ swaps?

Almost like Apple with component serialisation.

5h agoHN ↗

With very few exceptions, if there is something in you that isn't you then you would be better off if it was dead.

4h agoHN ↗

Your body gives them a choice: containment or death, which is really just one option unless they can fight back.

5h agoHN ↗

There are extremely good security reasons for it.

Even if we assume your body has a foolproof is_same_species() test, your neighbors' cells may:

1. Be healthy, but have the wrong priorities or behavior, so that they start doing the wrong tasks or sending the wrong messages in the wrong places. [0]

2. Be healthy, but they're just a creepy flesh-mask a parasite has constructed around itself.

3. Be individually hijacked by viruses, and your body won't have the same baseline information to tell that they've deviated from your neighbor's standard.

4. They may be fully human, but gone feral into a transmissible tumor [1].

____

[0] This is actually a risk from pregnancy, as overambitious fetal cells leak into the mother.

[1] https://en.wikipedia.org/wiki/Clonally_transmissible_cancer

5h agoHN ↗

I'm a kidney transplant patient myself. Your cells have HLA markers to distinguish your own cells from foreign cells. That is to prevent your immune cells from attacking your own body. This also makes it harder to find a organ match.

The reason I needed a kidney transplant is because of an auto disease called IgA Nephropathy where the IgA antibody has a small defect that causes the rest of the immune system to attack it and the whole mess clogs up the kidney filters over time.

5h agoHN ↗

The way your body detects foreign cells is the same way your body detects foreign cells. It detects anything that doesn't have your, specific, randomly-generated at conception, friend-or-foe markers.

1h agoHN ↗

Would those markers be usable as a natural UUID?

5h agoHN ↗

To deal with:

1. Bacteria

2. Parasites

3. Cancer

In all these cases cells that are "other than your own" are in your system and need to be eliminated, in the case of cancer it's your own cells but with significant mutations, as far as I can tell there is always an immune response although in some cases it is actually counter productive.

8h agoHN ↗

The author suggests humans are overturned to repairing skin and blood, but I strongly disagree. People with problems with wound healing can face significant disability and mortality. Wound healing allows us to have surgery and close up with simple sutures. A lot of complications post-surgery in humans and other animals are specifically from impaired wound healing capability. It’s a good trade-off: nearly everyone will eventually get cut open by accident or on purpose. The skins ability to heal is so amazing that many types of wounds require nothing other than some cleaning, the body will fully clot, bridge, build, and scar back to most retained function. Wound healing allows us to heal large burns and even simply leave many wounds open to air.

Complications with healing are pretty brutal. Necrosis, amputation, infection are all common without the built-in cascade we have.

7h agoHN ↗

Your liver makes platelets so if your liver function is not optimal, wound healing is harder.

Some people also have rare diseases where they don’t have clotting factors so require a transfusion of clotting factors before surgery for optimal wound healing.

7h agoHN ↗

Your liver makes platelets

Megakaryocytes are primarily bone marrow cells.

6h agoHN ↗

Indeed, but your liver does make clotting factors and also thrombopoietin, which stimulates platelet production.

7h agoHN ↗

Many problems with would healing are due to nutrient deficiencies. For example, people who are sulfur deficient will heal and recover much slower than those who are not.

That's why so many professional athletes take MSM (Methylsulfonylmethane). Their bodies would not be able to recover as quickly without the extra sulfur.

6h agoHN ↗

Huh, another reason to eat more spinach I suppose.

5h agoHN ↗

The problem is not wound healing, the problem is over the top inflammatory responses, and yeah with out them injuries could be much worse, but we get a lot of diseases because of accumulated damaged from long term inflammations. Point is doing simple things like eating a bit of sugar spikes your inflammatory reactions, causing all sort of problems down the road.

Ideally we could have a switch, low inflammatory reactions when good, high inflammatory reactions on injuries.

4h agoHN ↗

I thought the reason was well known, and the article briefly touches it...

The liver's great ability to regenerate largely boils down to how homogenous and simple the liver actually is. It's structured more like a battery pack, where you have individual cells that are largely functionally identical to each other that perform the bulk of the work, and they happen to be connected together. If an individual cell fails, (for the most part) all you need to do is merely regrow a new one, and it's orientation matters little (relatively speaking as compared to other organs) so long as it's connected to the rest of the battery pack (organ).

Contrast that to something like a kidney, which has complex orientation that is formed via growth, and which has a high degree of different types of cells where replacing a part isn't as simple as merely regrowing the part which failed, but also about that growth happening in precisely the right location. So instead of it being like having to replace a failed cell in a battery pack, it's like replacing a wheel to a car. Attaching it anywhere (like the windshield for example) won't necessarily fix the issue, it needs to be connected to the axle...

4h agoHN ↗

Also, the liver metabolizes a lot of toxins, and some cells die in the process, so there was a strong pressure to replace them. That pressure was our ancestors insisting on eating toxic things like mushrooms and spoiled food until it didn't immediately kill them.

7h agoHN ↗

Many if not most of these oddities about humans come down to either they don’t affect reproduction, or because humans are social animals. Menopause makes sense because a grandmother will have more successful descendants if she stops having babies and helps her daughters with the grandkids. I would guess the few other species that exhibit menopause are also social animals.

5h agoHN ↗

A couple more points to add to this:

Most species make a baby (or babies), raise them to maturity before having another. Even a low chance of successfully raising another child is advantageous over no chance at all from turning off the baby maker. Humans, however, have children of a range of ages, making more before the first is finished. Having another inherently takes away from the ones that already exist. Having another that probably won't make it can be an evolutionary negative.

And humans have a much longer portion of their life spent on each offspring. This increases the chance of death before completion and thus makes more evolutionary pressure towards not putting effort into futile things.

Note that this works even if she is alone and doesn't help with the grandkids.

5h agoHN ↗

This is discussed at the bottom of the article: "Menopause: Humans, killer whales, pilot whales, beluga whales, false killer whales, narwhals one group of chimps in Uganda. No menopause: Everything else"

So, monkeys and apes (besides one species of chimps) don't get menopause, elephants don't get menopause, lions don't get menopause. If your prediction is, social animal => menopause, it's wrong 99% of the time.

3h agoHN ↗

It seems it might be more a combination of whether it's a social animal and how much help / how much danger the offspring is actually in. There's not a whole lot that fucks with elephants, and not a lot that successfully fucks with the young ones. And female elephants universally live in groups and collectively all protect each other. Female lions tend to do the same, and also have very few things that fuck with them.

Conversely human offspring is especially weak and incapable and susceptible to harm, and experiences a lot of threat even within the same species.

Not sure where that are of whale and chimps fit into that - flukes can also happen I guess.

7h agoHN ↗

Very nice, well written and interesting! Amazing!

7h agoHN ↗

Is there something that causes every substack article to be several times longer than it needs to be? There's just so much color and filler around the information I was interested in

6h agoHN ↗

The author cops to teleology, apologizes for it, then continues to use it to explain these behaviors.

This is always a problem when one tries to view biology through an engineering lens. The functions we see today emerged well after the genes themselves started on the path that allowed them to support these specific functions in us. Nor are the genes restricted to exactly identical functions even when their sequence is identical. The context of each cell matters.

Rather than beginning from external function and going down to find energy, replication and cancer/escape from multicellularity as factors affecting these organ’s behavior, it’s a lot better to go cell up, where metabolism, DNA replication, waste clearance, and cell to cell communication and cell-microenvironment sensing are all constantly having to be balanced.

The functions we see from ensembles of cells are composed of these cell level behaviors multiplexing.

And when we look at the eukaryotic cell, we don’t just see linear DNA. We also see mitochondria. Our mitochondria reproduce and proliferate in all cells, depending on energy requirements. The process also produces a lot of reactive oxygen species which need to be kept tamped down to prevent damage.

And the mitochondrial endosymbiotic event also potentially explains why we have linear DNA in a separate compartment. From first eukaryotic common ancestor (FECA) to the last eukaryotic common ancestor (LECA), you had two genomes inside one cell, and by the time we got to LECA a bunch of DNA from the alphaproteobacter that became mitochondria migrated to the core genome, leaving the mitochondrial genome to remain circular.

The exact time and reason for linearization of DNA is (as yet) lost to deep time. But we can see a path from two circular genomes to one linear one circular and construct a fairly believable hypothesis to why you got linearization: as cell type increased, you needed more transcript copies, and access to different transcripts at different times at different rates. A linear genome is much better able to accommodate these requirements. And this has resulted in prokaryotes also partially or fully linearizing some of their genomic material when the need arises (Cyanobacteria, the first autotrophs, have some strains with linear ends, and Lyme disease and streptococcus also break from full circularity).

This linearization is also critical for mitosis and meiosis.

As far as the exact causal chain, we are, at the moment, groping in the blind, since the FECA->LECA transition occurred some 2 billion years ago, and we don’t have candidate fossils. They are reconstructed from genomic puzzle pieces, which is why we have these holes.

In that transition timetable, it is possible commitments were made that shape everything we see today.

Beyond doubt, those commitments had to thread everything a single cell has to thread.

And then came multicellularity, which had its own tradeoffs.

Teleology doesn’t help because none of these early commitments were being made with the specifics of our current lifestyle in mind, or even that complex beings like us could exist.

Evolution is a blind watchmaker. Ignore that and you’ll end up with nice sounding ideas that may not quite fit what we see.

6h agoHN ↗

Most of the body doesn't regenerate because there was not enough evolutionary pressure. Even with regeneration you could still easily die from some severe injury, blood loss or disease. While salamander regeneration is impressive, it has its limitations. For example, no known adult salamander can regenerate an entirely removed eye. Also if you chop a salamander, it will not regenerate like a Planarian worm, it will just die. And a fun fact, Axolotls can regrow a limb yet cannot regenerate an adult eye lens.

Also, although the article is mostly true, there are some inaccuracies:

> Neurons and cardiac muscle cells don't reproduce after childhood

There is some evidence showing a slow cell turnover in cardiac muscle, estimated around ~1% per year in young adults, falling toward ~0.5% in older people. Most neurons don't regenerate, but there an evidence that some parts of the adult brain (such as hippocampus) still produce new neurons, although the number is very low.

Liver regeneration is not perfect either: https://www.youtube.com/watch?v=rOv7Sr3X-eo .

6h agoHN ↗

Actually I would argue that the evolutionary pressures run against it: if one generation dominates then the species can't evolve.

6h agoHN ↗

Regeneration is unlikely to warrant eternal life. In the wild, most animals die before even showing serious signs of aging. Even if regeneration increased lifespan, poorly adapted individuals would still die.

3h agoHN ↗

evolution doesn't act on the species or even individuals, it acts on the genes which is why it looks like evolution acts on the individual and its close family unit.

people have a hard time grasping this concept for some reason.

my favorite example to illustrate this is the trait of being poisonous. if evolution cared about species and then every single one would be poisonous and all predators would have to hyper specialize in prey (arms race between a particular poison and its resistance). it's precisely because it's so difficult to elicit a benefit from this strategy for the lineage that it's so rare. almost always a mutation in coloration has to happen to set the lineage apart from the others first. and then the lineage has to survive the disadvantage long enough.

3h agoHN ↗

The current model is that evolution acts on the molecular, cellular, and genetic level, and most importantly, at the population level.

3h agoHN ↗

    > acts on the molecular, cellular

this is rare and even more difficult to understand.

https://en.wikipedia.org/wiki/Structural_inheritance

basically, the genes do not generally contain blueprints but rather processes utilizing existing cellular machinery. a "mutation" can occur in a machine which will allow a propagating difference.

and there is nothing special about populations. it's merely the only way to observe most changes. gene frequencies in gene pools.

4h agoHN ↗

I have an axolotl. They're really incredible creatures, with way more personality and interests than you would expect. They are really soft, and almost have the same density as water, so they can be neutrally buoyant and even swim rapidly like a fish. They're also very sensitive to sharp things; mine recently got a cut from an aquarium decoration, which healed fully over the course of a week. Her previous owner had neglected her and induced tail curl, which took longer to heal (a few months) but did fully heal. I have since adjusted her tank to give it all flat or smooth surfaces, with some variety.

3h agoHN ↗

Oh no! I read that one as a teenager. Hunting!

5h agoHN ↗

but the process is slow and clumsy and can only produce tiny blood vessels.

This isn't entirely true. I have notable damage to one side and in the recovery process there was a significant increase in the visibility of the surface veins on that side. It's still clearly there years later. Existing vessels can grow larger when repair processes kick in.

5h agoHN ↗

To solve cancer we just need to engineer extremely redundant genetic controls for cell reproduction.

4h agoHN ↗

I have first-hand experience! My immune system slowly killed my liver (primary sclerosing cholangitis), and I had a transplant. (btw, for $0, thank you to the Australian health system)

I received a cut-down liver from the donor; I got the bigger lobe, a child recipient got the other lobe.

Within a few months of transplant, the new liver had regrown, but (probably because of the transplant orientation) rather than growing across to the left, it grew down the side of my body.

It's all good and functions fine, it's just that now my right-side of my body isn't as 'saggy' as my left because of the area it grew in to.

It's an amazing organ, and it truly sucks when you don't have a well-functioning one.

4h agoHN ↗

Does this mean a healthy donor could donate a sizable chunk of their liver every year?

3h agoHN ↗

Possible? yes. Practical, not really. Living liver donors (at least in Australia) are rare, because (unlike kidney donations) it's an extremely risky procedure for a living donor. My donor was a deceased donor, and I'm forever grateful for their (and their family's) decision.

3h agoHN ↗

There were 709 living donor liver transplants in the United States last year.

1h agoHN ↗

2025: 12,344 total (709 from living donors)

2024: 11,458 total (604 from living donors)

2h agoHN ↗

Hello fellow PSCer! Amazing to hear even partial liver transplants work.

4h agoHN ↗

Natural selection is designed into our genes.

Those of us with who get injuries that are life threatening, our genetics have engineered us to be culled from the gene pool. It's to protect the gene pool from other genes.

It's like if car makers made a car with square wheels but every time the car got into an accident it would repair itself so we would keep driving it. Evolution instead blows up the car as soon as it gets into a accident, so then only round wheeled cars remain.

4h agoHN ↗

It's God's sign to drink a pint of Guinness for breakfast, obviously.

3h agoHN ↗

Probably evolved because early humans kept finding new ways to poison themselves. Good design for an unforgiving environment.

2h agoHN ↗

Hi, your friendly, local pathologist here. I'm the kind of doctor that diagnoses liver diseases, cancer, lots of infections, inflammatory processes, benign tumors, and runs the lab that a lot of other doctors use the results from to inform a lot of their other decisions.

If you really want to learn about this stuff, Robert Weinberg's The Biology of Cancer is where to start. It introduces concepts starting where a high school student could understand and carefully walks through the history of our development of knowledge until, by the end, the pithy chapters are helping novel concepts for real science flower in your brain all on their own. It's the best book of biological science I have ever read. 10/10, will read again.

https://wwnorton.com/books/9780393887655

1h agoHN ↗

Hi, just curious and with due respect to your expertise.. have you or plan to integrate AI into your practice? How have you used it so far?

1h agoHN ↗

If you are trying to do market research, this is the wrong way

2h agoHN ↗

This text makes absolutely no sense from a scientific point of view.

1h agoHN ↗

Must be why our ancestors could eat so much questionable stuff. It's the ultimate biological retry mechanism.

40m agoHN ↗

Brains. After you reach adulthood, neurons don’t divide. If some of your neurons die—which happens every day—then they’re gone. If you get a brain injury, the other neurons will try to “learn around” the injury, but the neurons themselves are never replaced.

This is a very outdated view. Neuroscience has shown that neurogenesis continues throughout the entire life span of humans, albeit at a much slower rate. You might have a hard time recovering from a serious brain injury or stroke but losing a few brain cells won’t change a thing.